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Using NumPy Arrays in Shared Memory for Multiprocessing
When working with multiprocessing in Python, sharing arrays between processes can be challenging. Using a NumPy array in multiprocessing may present difficulties if you require it to behave like a NumPy array rather than a simple ctypes array.
Problem Statement
In the provided example, the NumPy array is wrapped in a ctypes Array() object. While this allows access to the array in a ctypes manner, it loses the functionality of a NumPy array. Operations like -1*arr or arr.sum() cannot be performed, and converting it back to a NumPy array would break the shared memory.
Solution using shared_arr.get_lock()
To retain NumPy array functionality while using a shared memory array, you can use the get_lock() method available from a shared array:
shared_arr = mp.Array(ctypes.c_double, N) def f(i): with shared_arr.get_lock(): arr = np.frombuffer(shared_arr.get_obj()) arr[i] = -arr[i]
By using the get_lock() method, you can synchronize access to the shared array and ensure that it is accessed like a NumPy array within the process.
Example
The following code offers an improved example that retains NumPy array functionality while utilizing shared memory:
import multiprocessing as mp import numpy as np N = 100 shared_arr = mp.Array(ctypes.c_double, N) arr = np.frombuffer(shared_arr.get_obj()) # Fill the shared array with random values arr[:] = np.random.uniform(size=N) # Create a pool of processes with mp.Pool(initializer=init, initargs=(shared_arr,)) as pool: # Define functions that modify the shared array def f(i): with shared_arr.get_lock(): arr -= 1 # Subtract 1 from each array element within the process pool.map(f, range(N)) # Check the modified shared array assert np.allclose(arr, -1)
In this example, the init() function sets up the shared_arr for each process, and the f() function operates on the shared array within the lock. The modified shared array is then accessible by the main process after joining the pool. This method provides a synchronized and NumPy-compatible way to use a shared array in multiprocessing.
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