"Large Data" Workflows Using Pandas
When dealing with datasets too large to fit in memory, efficient workflows are crucial. For this, you can utilize HDFStore to hold datasets on disk and retrieve only the necessary parts.
Loading Flat Files
Iteratively import large flat files into a permanent disk-based database structure. Each file should consist of records of consumer data with an equal number of columns.
Querying the Database
To use subsets of data with Pandas, perform queries to retrieve specific data based on the required columns. These selected columns should fit within memory constraints.
Updating the Database
After manipulating data in Pandas, append the new columns to the database structure. These new columns are usually created by performing operations on the selected columns.
Example Workflow
- Import a flat-file and store it in an on-disk database.
- Read subsets of this data into Pandas for analysis.
- Create new columns by performing operations on the subsets.
- Append the new columns back into the on-disk database.
- Repeat steps 2-4 for additional subsets and operations.
Additional Considerations
- The database structure should allow for efficient row-wise operations, as queries will be based on row criteria.
- To minimize memory usage, store different groups of fields in separate tables or groups within the database.
- Define "data_columns" for specific columns to allow rapid row selection based on those columns.
By following these best practices, you can create an efficient workflow for handling large datasets in Pandas, enabling you to query, manipulate, and update data efficiently even when dealing with large files that exceed memory capacity.
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