bioSkills 安装器

一种元技能（meta-skill），用于安装完整的 bioSkills 技能集（涵盖 62 个类别，共计 425 项技能），专为生物信息学分析设计。

安装方法

运行随附的安装脚本，以下载并安装全部 bioSkills：

bash scripts/install-bioskills.sh

或仅安装指定类别：

bash scripts/install-bioskills.sh --categories "single-cell,variant-calling,differential-expression"

安装内容概览

安装完成后

安装完成后，系统将根据当前任务自动触发相应技能。示例请求如下：

• “我有经处理与对照样本的 RNA-seq 表达计数数据 —— 找出差异表达基因”
• “从该全基因组测序 BAM 文件中调用变异位点”
• “对我的单细胞 RNA-seq 数据进行聚类，并鉴定标志基因”
• “预测该蛋白质序列的三维结构”
• “对这些鸟枪法测序（shotgun）读段执行宏基因组分类分析”

源代码地址

GitHub：https://github.com/GPTomics/bioSkills

相关技能

安装完成后，以下 425 项独立技能将在对应类别中可用： sequence-io, sequence-manipulation, database-access, alignment, alignment-files, variant-calling, phylogenetics, differential-expression, structural-biology, single-cell, pathway-analysis, restriction-analysis, methylation-analysis, chip-seq, metagenomics, long-read-sequencing, read-qc, read-alignment, rna-quantification, genome-assembly, genome-intervals, data-visualization, expression-matrix, copy-number, proteomics, flow-cytometry, population-genetics, multi-omics-integration, spatial-transcriptomics, machine-learning, workflow-management, microbiome, metabolomics, phasing-imputation, primer-design, hi-c-analysis, imaging-mass-cytometry, atac-seq, crispr-screens, reporting, experimental-design, clinical-databases, tcr-bcr-analysis, small-rna-seq, epitranscriptomics, clip-seq, ribo-seq, genome-engineering, systems-biology, epidemiological-genomics, immunoinformatics, comparative-genomics, alternative-splicing, chemoinformatics, liquid-biopsy, genome-annotation, gene-regulatory-networks, causal-genomics, rna-structure, temporal-genomics, ecological-genomics, workflows